Public SNP DBs

Please note before download:

  • These installation packages can be used for new SEQUENCE Pilot installations as well as to update already existing SEQUENCE Pilot installations.
  • The Public SNP DBs only can be used for the SEQUENCE Pilot modules SEQNEXT, SEQPATIENT and SEQARRAY and in case a corresponding genome (hg19 / hg38) is installed.
  • The installation packages v5.2.0 and v5.3.0 are for SEQUENCE Pilot versions 5.2.0 or higher.
  • The installation package v5.2.0 includes the databases dbSNP, 1000 GenomesClinVar, ClinVitae, ExAC and gnomAD (for hg38 1000 Genomes, ExAC and gnomAD are not available).
  • The installation package v5.3.0 includes the databases dbSNP, ClinVar, ExAC and gnomAD (for hg38 ExAC is not available).

Download from our Website

Public SNP DB
SEQPILOT VERSION
SIZE
DATE
DOWNLOAD
Public SNP DB
hg19-GenomeVarDB-v5.3.0
SEQPILOT VERSION
5.3.0 or higher
SIZE
34.5 GB
DATE
03-March-2022
Public SNP DB
hg38-GenomeVarDB-v5.3.0
SEQPILOT VERSION
5.3.0 or higher
SIZE
38.8 GB
DATE
03-March-2022
Public SNP DB
hg19-GenomeVarDB-v5.2.0
SEQPILOT VERSION
5.2.0 or higher
SIZE
28.2 GB
DATE
22-July-2020
Public SNP DB
hg38-GenomeVarDB-v5.2.0
SEQPILOT VERSION
5.2.0 or higher
SIZE
23.4 GB
DATE
22-July-2020

Installation

Update:

  • Delete the old Public SNP DBs of your SEQUENCE Pilot installation first. These are the folders GenomeDBVar and GenomeVar of the directory SeqPilot\GeneFiles.
  • Unzip the downloaded file into the directory SeqPilot\GeneFiles of your SEQUENCE Pilot installation.
  • After the installation the folders GenomeDBVar and GenomeVar should be shown up again in the directory SeqPilot\GeneFiles.

New installation:

  • Unzip the downloaded file into the directory SeqPilot\GeneFiles of your SEQUENCE Pilot installation.
  • After the installation the folders GenomeDBVar and GenomeVar should be shown up in the directory SeqPilot\GeneFiles.